HumanMine

HumanMine loads Gene models and sequence from the NCBI. We load additional Gene information from several other sources. Read more

Query for genes:

• GO term    Genes
• Gene    GO terms.
• Gene    Chromosomal location.
• Chromosomal Location    All Genes + Transcripts + Exons
• Region    Genes
• Gene + GO term    Genes by GO term
• Gene    Overlapping genes.

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HumanMine loads Protein annotation and sequence from UniProt and domain information from InterPro. We cross-reference protein information from many additional sources. Read more

Query for proteins:

• Gene A    Interaction <-- Gene B
• Gene    Proteins.
• Protein    Protein Complex
• Gene    Protein tissue Localisation
• Protein    Interactions
• Gene    protein complex
• Protein    Sequence
• Protein Domain    Protein and Genes

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HumanMine loads SNP data from the GWAS catalogue. Read more

Query for snps:

• SNP    GWAS Hits
• Gene Report    GWAS hit

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HumanMine loads Disease to Gene mappings from OMIM. Read more

Query for diseases:

• Gene    Disease (OMIM)
• Disease    Gene(s)
• Gene    Disease + HPO annotations (Human Phenotype Ontology
• Disease Expression    Genes
• Gene (Hum OR Rat)    Mouse Allele (Phenotype)
• Gene    Alleles and Disease (clinVar data)
• Mouse Gene    Allele [Phenotype]
• Human Disease    Human Gene + Orthologue Gene(s)

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HumanMine loads Pathway annotations from KEGG and Reactome and Gene Ontology (GO) annotations from MGI and UniProt. Read more

Query for function:

• GO term    Genes
• Gene    GO terms.
• Tissue    Gene Expression (Array Express)
• Gene    Gene Expression (Tissue, Disease; Array Express, E-MTAB-62)
• Pathway    Genes
• Gene    Disease + HPO annotations (Human Phenotype Ontology
• Gene + GO term    Genes by GO term
• Gene A    Pathways <-- Gene B

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HumanMine loads Interactions from IntAct and BioGRID. Read more

Query for interactions:

• Gene A    Interaction <-- Gene B
• Gene    Interactions
• Gene + Tissue Expression    Interactors that are expressed in that tissue
• Protein    Protein Complex
• Gene + Pathway    Interactions
• Protein    Interactions
• Gene    protein complex
• Gene    Physical and Genetic Interactions

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HumanMine loads homologue predictions from Panther. Read more

Query for homology:

• Gene    Orthologues
• Gene (Hum OR Rat)    Mouse Allele (Phenotype)

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