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Data

HumanMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.

The following data are loaded in the HumanMine:


Type Source Organisms Version
Genome sequence and annotation NCBI Human 3rd June 2016
GWAS HuGE navigator (including GWAS catalog) Human December 2014
Gene names and symbol HGNC, NCBI, MGI, RGD Human, Mouse, Rat June 2016
Protein sequence and annotation UniProt Human, Mouse 2016_05
Protein domains InterPro Human, Mouse 2016 2nd June
Gene Ontology UniProt, MGI, GO Consortium Human, Mouse June 2016
Pathways Reactome Human, Mouse June 2016, v56
Pathways KEGG Human, Mouse May 2011
Protein localisation Human Protein Atlas (HPA) Human June 2016, v15
Gene expression ArrayExpress Atlas (experiment E-MTAB-62) Human June 2011
Gene expression ArrayExpress Atlas (experiment E-MTAB-513 Illumina body map) Human July 2014
Interactions IntAct Human, Mouse April 2016, release 198
Interactions BioGRID Human, Mouse June 2016, release 3.4.137
Publications NCBI PubMed (gene to PubMed id mappings) Human, Mouse June 2015
Disease OMIM Human June 2016
Phenotypes HPO Human November 2015
Orthologues MGI Mouse June 2016