HumanMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.
| Type | Source | Organisms | Version |
|---|---|---|---|
| Genome sequence and annotation | NCBI | Human | November 2016 |
| GWAS | HuGE navigator (including GWAS catalog) | Human | December 2014 |
| Gene names and symbol | HGNC, NCBI, MGI, RGD | Human, Mouse, Rat | November 2016 |
| Protein sequence and annotation | UniProt | Human, Mouse | 2016_10 |
| Protein domains | InterPro | Human, Mouse | November 2016 |
| Gene Ontology | UniProt, MGI, GO Consortium | Human, Mouse | November 2016 |
| Pathways | Reactome | Human, Mouse | November 2016, v58 |
| Pathways | KEGG | Human, Mouse | May 2011 |
| Protein localisation | Human Protein Atlas (HPA) | Human | June 2016, v15 |
| Gene expression | ArrayExpress Atlas (experiment E-MTAB-62) | Human | June 2011 |
| Gene expression | ArrayExpress Atlas (experiment E-MTAB-513 Illumina body map) | Human | July 2014 |
| Interactions | IntAct | Human, Mouse | Release 201 - October 2016 |
| Interactions | BioGRID | Human, Mouse | Release 3.4.142 |
| Publications | NCBI PubMed (gene to PubMed id mappings) | Human, Mouse | November 2016 |
| Disease | OMIM | Human | November 2016 |
| Phenotypes | HPO | Human | November 2016 |
| Orthologues | MGI | Mouse | November 2016 |
| Signalling | Signor, Signaling Network Open Resource | Human, mouse | April 2017 |
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