HumanMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.
| Type | Source | Organisms | Version |
|---|---|---|---|
| Genome sequence and annotation | NCBI | Human | July 2017 |
| GWAS | HuGE navigator (including GWAS catalog) | Human | December 2014 |
| Gene names and symbol | HGNC, NCBI, MGI, RGD | Human, Mouse, Rat | July 2017 |
| Protein sequence and annotation | UniProt | Human, Mouse | 2017_06 |
| Protein domains | InterPro | Human, Mouse | July 2017 |
| Gene Ontology | UniProt, MGI, GO Consortium | Human, Mouse | July 2017 |
| Pathways | Reactome | Human, Mouse | July 2017, v61 |
| Pathways | KEGG | Human, Mouse | May 2011 |
| Protein localisation | Human Protein Atlas (HPA) | Human | June 2016, v15 |
| Gene expression | ArrayExpress Atlas (experiment E-MTAB-62) | Human | June 2011 |
| Gene expression | ArrayExpress Atlas (experiment E-MTAB-513 Illumina body map) | Human | July 2014 |
| Interactions | IntAct | Human, Mouse | July 2017 |
| Interactions | BioGRID | Human, Mouse | Release 3.4.150 |
| Publications | NCBI PubMed (gene to PubMed id mappings) | Human, Mouse | July 2017 |
| Disease | OMIM | Human | July 2017 |
| Phenotypes | HPO | Human | July 2017 |
| Orthologues | MGI | Mouse | July 2017 |
| Signalling | Signor, Signaling Network Open Resource | Human, mouse | July 2017 |
| GTex | GTex, Tissue specific gene expression and eQTLs | Human | July 2017 |
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