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Data

HumanMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.

The following data are loaded in the HumanMine:


Type Source Organisms Version
Genome sequence and annotation NCBI Human July 2017
GWAS HuGE navigator (including GWAS catalog) Human December 2014
Gene names and symbol HGNC, NCBI, MGI, RGD Human, Mouse, Rat July 2017
Protein sequence and annotation UniProt Human, Mouse 2017_06
Protein domains InterPro Human, Mouse July 2017
Gene Ontology UniProt, MGI, GO Consortium Human, Mouse July 2017
Pathways Reactome Human, Mouse July 2017, v61
Pathways KEGG Human, Mouse May 2011
Protein localisation Human Protein Atlas (HPA) Human June 2016, v15
Gene expression ArrayExpress Atlas (experiment E-MTAB-62) Human June 2011
Gene expression ArrayExpress Atlas (experiment E-MTAB-513 Illumina body map) Human July 2014
Interactions IntAct Human, Mouse July 2017
Interactions BioGRID Human, Mouse Release 3.4.150
Publications NCBI PubMed (gene to PubMed id mappings) Human, Mouse July 2017
Disease OMIM Human July 2017
Phenotypes HPO Human July 2017
Orthologues MGI Mouse July 2017
Signalling Signor, Signaling Network Open Resource Human, mouse July 2017
GTex GTex, Tissue specific gene expression and eQTLs Human July 2017