HumanMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included.
| Data Category | Organism | Data | Source | Version |
|---|---|---|---|---|
Genes |
Human | Human genome sequence and annotation | NCBI | July 2018 |
| Human, Mouse, Rat | Gene names and symbol | HGNC, NCBI, MGI, RGD | July 2018 | |
Proteins |
Human, Mouse | Protein sequence and annotation | UniProt | 2018_06 |
| Human, Mouse | Protein domains | InterPro | July 2018 | |
Gene ontology |
Human, Mouse | Gene ontology annotations | UniProt, MGI, GO Consortium | July 2018 |
Pathways |
Human, Mouse | Gene-pathway annotations from Reactome | Reactome | July 2018, v65 |
| Human, Mouse | Gene-pathway annotations from Kegg | KEGG | May 2011 | |
Expression |
Human | Protein localisation | Human Protein Atlas (HPA) | July 2018, v18 |
| Human | Human gene expression atlas of 5372 samples representing 369 different cell and tissue types, disease states and cell lines | ArrayExpress Atlas (experiment E-MTAB-62) | June 2011 | |
| Human | Expression data for 16 human tissue types | ArrayExpress Atlas (experiment E-MTAB-513 Illumina body map) | July 2014 | |
| Human | RNA-seq data for human tissues and significant variant-gene associations | GTex, Tissue specific gene expression and eQTLs | July 2018 | |
Interactions |
Human, Mouse | Physical interaction data | IntAct | July 2018 |
| Human, Mouse | Genetic and physical interaction data | BioGRID | Release 3.4.162 | |
Disease and phenotypes |
Human | Gene-disease associations from Online Mendelian Inheritance in Man (OMIM) | OMIM | July 2017 |
| Human | Gene-Phenotype annotations | HPO | July 2018 | |
| Mouse | Mouse alleles from MGI | MGI | July 2018 | |
| Human | Clinically significant sequence variants | ClinVar | July 2018 | |
| Human | Genome wide association studies | GWAS catalog (including HuGE navigator) | December 2014 | |
Orthologues |
Human, Mouse, Rat, Drosophila, C. elegans, S.cerevisiae | Orthologue and paralogue predictions between these organisms | Panther | July 2018, v13.1 |
Publications |
Human, Mouse | Gene to PubMed ID mappings | NCBI PubMed | July 2018 |
