help  | about  | cite  | software

Gene : VPS39 Homo sapiens

Name  ? VPS39 subunit of HOPS complex Cytological Location  15q15.1
Brief Description  VPS39, HOPS complex subunit
description  This gene encodes a protein that may promote clustering and fusion of late endosomes and lysosomes. The protein may also act as an adaptor protein that modulates the transforming growth factor-beta response by coupling the transforming growth factor-beta receptor complex to the Smad pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
  • synonyms:
  • vacuolar protein sorting 39 (yeast),
  • HGNC:20593,
  • VAM6,
  • AF280814,
  • VPS39, HOPS complex subunit,
  • NM_015289,
  • KIAA0770,
  • VAM6,
  • OTTHUMG00000130467,
  • vacuolar protein sorting 39 homolog (S. cerevisiae),
  • uc001zpc.4,
  • hVam6p,
  • TLP,
  • VPS39
  • identifiers:
  • 23339,
  • ENSG00000166887,
  • VPS39

Genome feature

Region: gene ? Length: 49631  
Location: 15:42158701-42208331 reverse strand Cyto location: 15q15.1


Uni Prot Comments Displayer

Protein Atlas Displayer

Gene Expression Atlas Tissues Displayer

Gene Expression Atlas Diseases Displayer

Publication Counts Displayer

Curated Proteins Displayer

Function

Gene Ontology Displayer

0 Pathways

Gene --> GO terms.

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]

Genomics

J Browse Displayer

Gene Structure Displayer

Overlapping Features Displayer

Mouse Alleles Displayer

Gene --> Chromosomal location.

Gene --> GO terms.

Gene --> Overlapping genes.

Proteins

Gene --> Proteins.

SNPs

Gene Report --> GWAS hit

Disease

0 Diseases

Gene (Hum OR Rat) --> Mouse Allele (Phenotype)

Gene --> Alleles and Disease (clinVar data)

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]

Homology

Homologue Displayer

Gene --> Orthologues

Interactions

Cytoscape Network Displayer

Gene --> Physical and Genetic Interactions

Expression

Gene(s) --> Significant SNPs (GTex data)

Gene Ontology

Gene --> GO terms.

 

Other

0 Pathways

411 SN Ps

5 Cross References

14 Data Sets

8 Homologues

0 Located Features

90 Rna Seq Results