help  | about  | cite  | software

Gene : CCAT1 Homo sapiens

Name  ? colon cancer associated transcript 1 Cytological Location  8q24.21
Brief Description  colon cancer associated transcript 1
Description  This gene produces a long non-coding RNA that promotes tumor formation and is upregulated in colon cancer and other cancer cell types. This transcript may regulate long range chromosomal interactions, including at the Myc oncoprotein locus. This RNA may also function as a molecular sponge for microRNAs. [provided by RefSeq, Dec 2017]
  • synonyms:
  • CARLO5,
  • CCAT1,
  • CARLo-5,
  • OTTHUMG00000165065,
  • CARLo-5,
  • onco-lncRNA-40,
  • NR_108049,
  • onco-lncRNA-40,
  • HGNC:45128,
  • uc003ysa.4,
  • colon cancer associated transcript 1 (non-protein coding),
  • HM358356,
  • AK125310
  • identifiers:
  • 100507056,
  • CCAT1

Genome feature

Region: gene ? Length: 11887  
Location: 8:127207382-127219268 reverse strand Cyto location: 8q24.21


Uni Prot Comments Displayer

Protein Atlas Displayer

Gene Expression Atlas Tissues Displayer

Gene Expression Atlas Diseases Displayer

Publication Counts Displayer

Curated Proteins Displayer

Function

Gene Ontology Displayer

0 Pathways

Gene --> GO terms.

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]

Genomics

J Browse Displayer

Gene Structure Displayer

Overlapping Features Displayer

Mouse Alleles Displayer

Gene --> Chromosomal location.

Gene --> GO terms.

Gene --> Overlapping genes.

Proteins

Gene --> Proteins.

SNPs

Gene Report --> GWAS hit

Disease

0 Diseases

Gene (Hum OR Rat) --> Mouse Allele (Phenotype)

Gene --> Alleles and Disease (clinVar data)

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]

Homology

Homologue Displayer

Interactions

Cytoscape Network Displayer

Gene --> Physical and Genetic Interactions

Expression

Gene(s) --> Significant SNPs (GTex data)

Gene Ontology

Gene --> GO terms.

 

Other

0 Pathways

0 SN Ps

4 Cross References

6 Data Sets

0 Homologues

0 Located Features

0 Rna Seq Results