help  | about  | cite  | software

Gene : HMGA1 Homo sapiens

Name  ? high mobility group AT-hook 1 Cytological Location  6p21.31
Brief Description  high mobility group AT-hook 1
Description  This gene encodes a chromatin-associated protein involved in the regulation of gene transcription, integration of retroviruses into chromosomes, and the metastatic progression of cancer cells. The encoded protein preferentially binds to the minor groove of AT-rich regions in double-stranded DNA. Multiple transcript variants encoding different isoforms have been found for this gene. Pseudogenes of this gene have been identified on multiple chromosomes. [provided by RefSeq, Jan 2016]
  • synonyms:
  • AF176039,
  • OTTHUMG00000014539,
  • HMGIY,
  • high-mobility group (nonhistone chromosomal) protein isoforms I and Y,
  • NM_145899,
  • HMG-R,
  • uc003oit.4,
  • HMGIY,
  • HGNC:5010,
  • HMGA1,
  • HMGA1A
  • identifiers:
  • 3159,
  • ENSG00000137309,
  • HMGA1

Genome feature

Region: gene ? Length: 9359  
Location: 6:34236873-34246231 Cyto location: 6p21.31

Uni Prot Comments Displayer

Protein Atlas Displayer

Gene Expression Atlas Tissues Displayer

Gene Expression Atlas Diseases Displayer

Publication Counts Displayer

Curated Proteins Displayer


Gene Ontology Displayer

Gene --> GO terms.

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]


J Browse Displayer

Gene Structure Displayer

Overlapping Features Displayer

Mouse Alleles Displayer

Gene --> Chromosomal location.

Gene --> GO terms.

Gene --> Overlapping genes.


Gene --> Proteins.


Gene Report --> GWAS hit


1 Diseases

Gene (Hum OR Rat) --> Mouse Allele (Phenotype)

Gene --> Alleles and Disease (clinVar data)

Gene -> HPO annotation (Human Phenotype Ontology)

Mouse Gene --> Allele [Phenotype]


Homologue Displayer


Cytoscape Network Displayer

Gene --> Physical and Genetic Interactions


Gene(s) --> Significant SNPs (GTex data)

Gene Ontology

Gene --> GO terms.



108 SN Ps

5 Cross References

19 Data Sets

6 Homologues

0 Located Features

97 Rna Seq Results